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Plant Small RNA Sequencing

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Introductions

Small RNA Sequencing

Small RNA refers to endogenous non-protein RNA with a length of 18-30 nt, which is widely present in higher and lower organisms, and regulates the transcription and post-transcription level of mRNA and other life processes. Small RNA can be classified into three categories: miRNA (microRNA), siRNA (small interfering RNA), piRNA (piwi-interacting RNA). Small RNA controls gene expression by silencing and degrading its target gene molecules, and it plays an important regulatory role in the normal growth and development of organisms and the occurrence of diseases. This technology is mainly used in gene post-transcriptional regulation research, gene silencing research, small RNA target analysis and regulatory network and so on.

Services

Lifeasible adopts next-generation sequencing technology to provide a new and unique research platform suitable for in-depth identification and quantitative analysis of small RNAs of various species. Through in-depth sequencing, small RNA maps at the whole genome level of any species can be discovered, identified, and quantified, which advances the study of small RNA functions.

Workflow of small RNA sequencing

Workflow of small RNA sequencing

Analysis content

  • Alignment reference sequence
  • Analyze the comparison rate and coverage of sequencing reads

  • Classification notes for small RNA
  • Screen and identify known and new sRNA

  • Base editing analysis
  • miRNA sequence analysis

  • Differential expression analysis
  • Differentially expressed sRNA between samples

  • Target gene prediction
  • sRNA target gene information

  • Differential sRNA target gene
  • GO / KEGG enrichment, in-depth exploration of sRNA functions

Sample requirements

  • Complete and pollution-free total RNA
  • Total RNA≥10μg, RNA concentration≥200ng/μl, RIN≥7.5, 28S/18S≥1.3

  • Small RNA (<200nt)
  • Small RNA total≥1μg, concentration≥20ng/μl

  • Please put the sample in a 1.5ml tube, indicate the sample name, concentration and preparation time on the tube, and use parafilm to seal the tube mouth.
  • Before shipping, fix all sample tubes in 50ml centrifuge tubes with caps and ship them on dry ice.

Project cycle

  • The entire project generally takes about 2 months.

Feedback to customers

  • Raw data
  • A project report includes experimental process, instrument parameters, analysis methods and results, etc.

Service process

Service process

Advantages

  • Lifeasible specializes in providing services related to agricultural molecular breeding, with standardized systems and scientific management.
  • The one-stop service we provide makes your upstream and downstream experiments seamlessly connected, facilitates your experiments more conveniently and quickly.
  • The continuously updated and expanded high-performance computing platform ensures efficient data processing and secure data storage.
  • Personalized customized package service.

※ It should be noted that our service is only used for research.

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